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1

Epidemiological and clinical consequences of within-host evolution

Samuel Alizon, Fabio Luciani, Roland R. Regoes

Journal:

Trends in Microbiology

Year:

2011

Language:

english

File:

PDF, 410 KB

english, 2011

2

Population biological principles of drug-resistance evolution in infectious diseases

Pia Abel zur Wiesch, Roger Kouyos, Jan Engelstädter, Roland R Regoes, Sebastian Bonhoeffer

Journal:

The Lancet Infectious Diseases

Year:

2011

Language:

english

File:

PDF, 256 KB

english, 2011

3

Virus Dynamics: the Effect of Target Cell Limitation and Immune Responses on Virus Evolution

Roland R. Regoes, Dominik Wodarz, Martin A. Nowak

Journal:

Journal of Theoretical Biology

Year:

1998

Language:

english

File:

PDF, 279 KB

english, 1998

4

Correction: Theoretical analysis of the evolution of immune memory

Frederik Graw, Carsten Magnus, Roland R Regoes

Journal:

BMC Evolutionary Biology

Year:

2011

Language:

english

File:

PDF, 130 KB

english, 2011

5

Restricted occupancy models for neutralization of HIV virions and populations

Carsten Magnus, Roland R. Regoes

Journal:

Journal of Theoretical Biology

Year:

2011

Language:

english

File:

PDF, 384 KB

english, 2011

6

An open source tool to infer epidemiological and immunological dynamics from serological data: Serosolver

Hay, James A., Minter, Amanda, Ainslie, Kylie E. C., Lessler, Justin, Yang, Bingyi, Cummings, Derek A. T., Kucharski, Adam J., Riley, Steven, Regoes, Roland R

Journal:

PLoS Computational Biology

Year:

2020

File:

PDF, 3.92 MB

2020

7

HIV Coreceptor Usage and Drug Treatment

ROLAND R. REGOES, SEBASTIAN BONHOEFFER

Journal:

Journal of Theoretical Biology

Year:

2002

Language:

english

File:

PDF, 251 KB

english, 2002

8

EVOLUTION OF VIRULENCE IN A HETEROGENEOUS HOST POPULATION

Roland R. Regoes, Martin A. Nowak, Sebastian Bonhoeffer

Journal:

Year:

2000

Language:

english

File:

PDF, 216 KB

english, 2000

9

The role of evolution in the emergence of infectious diseases

Antia, Rustom, Regoes, Roland R., Koella, Jacob C., Bergstrom, Carl T.

Journal:

Year:

2003

Language:

english

File:

PDF, 264 KB

english, 2003

10

Mathematical models of cytotoxic T-lymphocyte killing

Regoes, Roland R, Yates, Andrew, Antia, Rustom

Journal:

Immunology & Cell Biology

Year:

2007

Language:

english

File:

PDF, 221 KB

english, 2007

11

A Quantitative Test of the Relationship between Parasite Dose and Infection Probability across Different Host-Parasite Combinations

Frida Ben-Ami, Roland R. Regoes and Dieter Ebert

Journal:

Proceedings Biological Sciences

Year:

2008

Language:

english

File:

PDF, 1.22 MB

english, 2008

12

Antimicrobial combinations: Bliss independence and Loewe additivity derived from mechanistic multi-hit models

Baeder, Desiree Y., Yu, Guozhi, Hozé, Nathanaël, Rolff, Jens, Regoes, Roland R.

Journal:

Philosophical Transactions Biological Sciences

Year:

2016

Language:

english

File:

PDF, 845 KB

english, 2016

13

Metabolite toxicity slows local diversity loss during expansion of a microbial cross-feeding community

Goldschmidt, Felix, Regoes, Roland R, Johnson, David R

Journal:

The ISME Journal

Year:

2017

Language:

english

File:

PDF, 1.52 MB

english, 2017

14

The Role of Exposure History on HIV Acquisition: Insights from Repeated Low-dose Challenge Studies

Regoes, Roland R., De Boer, Rob J.

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 1.23 MB

english, 2012

15

Population genetics meets cancer genomics

Roland R. Regoes

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

Language:

english

File:

PDF, 600 KB

english, 2010

16

Mathematical Model of Viral Kinetics In Vitro Estimates the Number of E2-CD81 Complexes Necessary for Hepatitis C Virus Entry

Padmanabhan, Pranesh, Dixit, Narendra M., Regoes, Roland Robert

Journal:

PLoS Computational Biology

Year:

2011

Language:

english

File:

PDF, 922 KB

english, 2011

17

The HIV-1 Entry Process: A Stoichiometric View

Brandenberg, Oliver F., Magnus, Carsten, Regoes, Roland R., Trkola, Alexandra

Journal:

Trends in Microbiology

Year:

2015

Language:

english

File:

PDF, 1.91 MB

english, 2015

18

Estimating the mutational fitness effects distribution during early HIV infection

Bons, Eva, Bertels, Frederic, Regoes, Roland R

Journal:

Virus Evolution

Year:

2018

Language:

english

File:

PDF, 721 KB

english, 2018

19

A speed–fidelity trade-off determines the mutation rate and virulence of an RNA virus

Fitzsimmons, William J., Woods, Robert J., McCrone, John T., Woodman, Andrew, Arnold, Jamie J., Yennawar, Madhumita, Evans, Richard, Cameron, Craig E., Lauring, Adam S., REGOES, ROLAND

Journal:

Year:

2018

Language:

english

File:

PDF, 2.76 MB

english, 2018

20

Long-term dynamics of measles in London: Titrating the impact of wars, the 1918 pandemic, and vaccination

Becker, Alexander D., Wesolowski, Amy, Bjørnstad, Ottar N., Grenfell, Bryan T., Regoes, Roland R

Journal:

PLoS Computational Biology

Year:

2019

File:

PDF, 1.35 MB

2019

21

Number of HIV-1 founder variants is determined by the recency of the source partner infection

Villabona-Arenas, Ch. JuliÃ¡n, Hall, Matthew, Lythgoe, Katrina A., Gaffney, Stephen G., Regoes, Roland R., HuÃ©, StÃ©phane, Atkins, Katherine E.

Journal:

Year:

2020

File:

PDF, 813 KB

2020

22

The More The Better? Combination Effects of Antimicrobial Peptides

Yu, Guozhi, Baeder, Desiree Y, Regoes, Roland R, Rolff, Jens

Journal:

Antimicrobial Agents and Chemotherapy

Year:

2016

Language:

english

File:

PDF, 3.01 MB

english, 2016

23

Successive range expansion promotes diversity and accelerates evolution in spatially structured microbial populations

Goldschmidt, Felix, Regoes, Roland R, Johnson, David R

Journal:

The ISME Journal

Year:

2017

Language:

english

File:

PDF, 2.75 MB

english, 2017

24

Evolution of Virulence in a Heterogeneous Host Population

Roland R. Regoes, Martin A. Nowak and Sebastian Bonhoeffer

Journal:

Year:

2000

Language:

english

File:

PDF, 1.25 MB

english, 2000

25

The relative contributions of infectious and mitotic spread to HTLV-1 persistence

Laydon, Daniel J., Sunkara, Vikram, Boelen, Lies, Bangham, Charles R. M., Asquith, Becca, Regoes, Roland R.

Journal:

PLoS Computational Biology

Year:

2020

File:

PDF, 1.98 MB

2020

26

Investigating the Consequences of Interference between Multiple CD8+ T Cell Escape Mutations in Early HIV Infection

Garcia, Victor, Feldman, Marcus W., Regoes, Roland R., Perelson, Alan S.

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 1.54 MB

english, 2016

27

Estimating the Stoichiometry of HIV Neutralization

Magnus, Carsten, Regoes, Roland R., De Boer, Rob J.

Journal:

PLoS Computational Biology

Year:

2010

Language:

english

File:

PDF, 511 KB

english, 2010

28

Virus dynamics and phyloanatomy: Merging population dynamic and phylogenetic approaches

Bons, Eva, Regoes, Roland R

Journal:

Immunological Reviews

Year:

2018

Language:

english

File:

PDF, 597 KB

english, 2018

29

Stabilization of cooperative virulence by the expression of an avirulent phenotype

Diard, Médéric, Garcia, Victor, Maier, Lisa, Remus-Emsermann, Mitja N. P., Regoes, Roland R., Ackermann, Martin, Hardt, Wolf-Dietrich

Journal:

Year:

2013

Language:

english

File:

PDF, 397 KB

english, 2013

30

Influence of the Fibroblastic Reticular Network on Cell-Cell Interactions in Lymphoid Organs

Graw, Frederik, Regoes, Roland R., De Boer, Rob J.

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 644 KB

english, 2012

31

Different Infectivity of HIV-1 Strains Is Linked to Number of Envelope Trimers Required for Entry

Brandenberg, Oliver F., Magnus, Carsten, Rusert, Peter, Regoes, Roland R., Trkola, Alexandra, Emerman, Michael

Journal:

Year:

2015

Language:

english

File:

PDF, 1.03 MB

english, 2015

32

Investigating CTL Mediated Killing with a 3D Cellular Automaton

Graw, Frederik, Regoes, Roland R., De Boer, Rob J.

Journal:

PLoS Computational Biology

Year:

2009

Language:

english

File:

PDF, 842 KB

english, 2009

33

Effects of contact structure on the transient evolution of HIV virulence

Park, Sang Woo, Bolker, Benjamin M., Regoes, Roland R

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 3.73 MB

english, 2017

34

Estimating the In Vivo Killing Efficacy of Cytotoxic T Lymphocytes across Different Peptide-MHC Complex Densities

Garcia, Victor, Richter, Kirsten, Graw, Frederik, Oxenius, Annette, Regoes, Roland R., Peters, Bjoern

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 629 KB

english, 2015

35

Disentangling Human Tolerance and Resistance Against HIV

Regoes, Roland R., McLaren, Paul J., Battegay, Manuel, Bernasconi, Enos, Calmy, Alexandra, Günthard, Huldrych F., Hoffmann, Matthias, Rauch, Andri, Telenti, Amalio, Fellay, Jacques, Schneider, David S

Journal:

Year:

2014

Language:

english

File:

PDF, 1.24 MB

english, 2014

36

Heterogeneous Host Susceptibility Enhances Prevalence of Mixed-Genotype Micro-Parasite Infections

van der Werf, Wopke, Hemerik, Lia, Vlak, Just M., Zwart, Mark P., Regoes, Roland Robert

Journal:

PLoS Computational Biology

Year:

2011

Language:

english

File:

PDF, 903 KB

english, 2011

37

Rapid Parasite Adaptation Drives Selection for High Recombination Rates

Marcel Salathé, Roger D. Kouyos, Roland R. Regoes and Sebastian Bonhoeffer

Journal:

Year:

2008

Language:

english

File:

PDF, 986 KB

english, 2008

38

Modelling how responsiveness to interferon improves interferon-free treatment of hepatitis C virus infection

Venugopal, Vishnu, Padmanabhan, Pranesh, Raja, Rubesh, Dixit, Narendra M., Regoes, Roland R.

Journal:

PLoS Computational Biology

Year:

2018

Language:

english

File:

PDF, 5.46 MB

english, 2018

39

Prediction of ultra-high-order antibiotic combinations based on pairwise interactions

Katzir, Itay, Cokol, Murat, Aldridge, Bree B., Alon, Uri, Regoes, Roland R.

Journal:

PLoS Computational Biology

Year:

2019

File:

PDF, 4.00 MB

2019

40

O modelo bioético principialista para a análise da moralidade da pesquisa científica envolvendo seres humanos ainda é satisfatório?

Schramm, Fermin Roland, Palácios, Marisa, Rego, Sergio

Journal:

Ciência & Saúde Coletiva

Year:

2008

File:

PDF, 59 KB

2008

41

Salmonella persisters promote the spread of antibiotic resistance plasmids in the gut

Bakkeren, Erik, Huisman, Jana S., Fattinger, Stefan A., Hausmann, Annika, Furter, Markus, Egli, Adrian, Slack, Emma, Sellin, Mikael E., Bonhoeffer, Sebastian, Regoes, Roland R., Diard, Médéric, Hardt,

Journal:

Year:

2019

Language:

english

File:

PDF, 21.91 MB

english, 2019

42

How Do Pathogen Evolution and Host Heterogeneity Interact in Disease Emergence?

Andrew Yates, Rustom Antia and Roland R. Regoes

Journal:

Proceedings Biological Sciences

Year:

2006

Language:

english

File:

PDF, 1.62 MB

english, 2006

43

Preclinical Assessment of HIV Vaccines and Microbicides by Repeated Low-Dose Virus Challenges

Regoes, Roland R., Longini, Ira M., Feinberg, Mark B., Staprans, Silvija I.

Journal:

Year:

2005

Language:

english

File:

PDF, 299 KB

english, 2005

44

Immuno-epidemiological Modeling of HIV-1 Predicts High Heritability of the Set-Point Virus Load, while Selection for CTL Escape Dominates Virulence Evolution

van Dorp, Christiaan H., van Boven, Michiel, de Boer, Rob J., Regoes, Roland R.

Journal:

PLoS Computational Biology

Year:

2014

Language:

english

File:

PDF, 1.19 MB

english, 2014

45

Effects of spatiotemporal HSV-2 lesion dynamics and antiviral treatment on the risk of HIV-1 acquisition

Byrne, Catherine M., Gantt, Soren, Coombs, Daniel, Regoes, Roland R

Journal:

PLoS Computational Biology

Year:

2018

Language:

english

File:

PDF, 6.59 MB

english, 2018

46

Prediction of PD-L1 inhibition effects for HIV-infected individuals

Zheltkova, Valerya, Argilaguet, Jordi, Peligero, Cristina, Bocharov, Gennady, Meyerhans, Andreas, Regoes, Roland R.

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 3.28 MB

english, 2019

47

Mathematical models: A key to understanding HIV envelope interactions?

Magnus, Carsten, Brandenberg, Oliver F., Rusert, Peter, Trkola, Alexandra, Regoes, Roland R.

Journal:

Journal of Immunological Methods

Year:

2013

Language:

english

File:

PDF, 2.79 MB

english, 2013

48

Similar Impact of CD8+ T Cell Responses on Early Virus Dynamics during SIV Infections of Rhesus Macaques and Sooty Mangabeys

Kouyos, Roger D., Gordon, Shari N., Staprans, Silvija I., Silvestri, Guido, Regoes, Roland R., De Boer, Rob J.

Journal:

PLoS Computational Biology

Year:

2010

Language:

english

File:

PDF, 412 KB

english, 2010

49

Prediction of ultra-high-order antibiotic combinations based on pairwise interactions

Katzir, Itay, Cokol, Murat, Aldridge, Bree B., Alon, Uri, Regoes, Roland R.

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 4.00 MB

english, 2019

50

Effects of multiple sources of genetic drift on pathogen variation within hosts

Kennedy, David A., Dwyer, Greg, Regoes, Roland

Journal:

Year:

2018

Language:

english

File:

PDF, 3.23 MB

english, 2018

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